Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs113247464 chr6:43261781 T/A 5.07E-10 486 31.25 28.57 44.3 KM Plot
PRAD rs113250157 chr17:79634541 T/C 4.36E-5 488 30.78 31.37 25.67 KM Plot
PRAD rs113283188 chr6:43355266 A/C 4.63E-10 486 31.27 29.4 44.3 KM Plot
PRAD rs113288947 chr4:187810578 T/C 1.9E-6 485 31.23 28.57 26.8 KM Plot
PRAD rs113336831 chr9:72855022 C/T 1.91E-5 491 30.73 31.42 22.45 KM Plot
PRAD rs11337395 chr1:202743973 AT/A 9.74E-6 490 31.25 27.57 37.17 KM Plot
PRAD rs113380912 chr4:187812730 T/C 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs113415095 chr2:232065389 A/AAACAACAAC 0.000191 480 31.87 28.72 31.13 KM Plot
PRAD rs113473153 chr6:43326369 G/C 5.07E-10 485 31.27 28.57 44.3 KM Plot
PRAD rs113565976 chr11:129943519 C/T 1.17E-5 492 30.87 33.13 22.67 KM Plot
PRAD rs11359207 chr5:154249814 GT/G 0 493 29.8 36.05 4.87 KM Plot
PRAD rs113600038 chr1:202705838 C/T 1.0E-5 493 30.93 29.5 27.92 KM Plot
PRAD rs113613332 chr1:202784561 C/T 6.61E-6 489 30.97 31.7 37.17 KM Plot
PRAD rs113622927 chr3:112503103 G/A 2.15E-7 494 30.78 33.72 17.77 KM Plot
PRAD rs113624607 chr5:138008459 C/T 9.49E-6 483 30.8 31.27 25.5 KM Plot